PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.112760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 334aa    MW: 37791.5 Da    PI: 8.5402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.112760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   Cucsa.112760.1 15 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 62
                     79******************************99************97 PP

2Myb_DNA-binding48.42.2e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Cucsa.112760.1  68 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23665IPR009057Homeodomain-like
PROSITE profilePS5129424.8361066IPR017930Myb domain
SuperFamilySSF466892.86E-3012109IPR009057Homeodomain-like
SMARTSM007172.4E-141464IPR001005SANT/Myb domain
PfamPF002493.3E-161562IPR001005SANT/Myb domain
CDDcd001671.60E-101762No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2466117IPR009057Homeodomain-like
SMARTSM007174.0E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129419.21667117IPR017930Myb domain
PfamPF002498.6E-1468113IPR001005SANT/Myb domain
CDDcd001675.97E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMGRPPCCDK IGVKKGPWTP EEDIILVSYI QEHGPGNWRS VPTNTGLLRC SKSCRLRWTN  60
YLRPGIKRGN FTDHEEKMII HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLRKM  120
QSLGGGGGSE GSGVQSQSNT TLSKGQWERR LQTDIHTAKK ALCEALSLEK KPDLEEYYYN  180
NNLKILQESP TAPTPPPQTI TTTYASSAEN IARLLENWMK KSPTKSSEIT TTTQVCMSEE  240
GSQISATNNY NNNSPDHQNP NNDNNNNLEG FFNNYSSHST TNNQEVVPLT FLEKWLFDDC  300
HGMRVFGLLE SFCFSFVYMM TPPQTQQKNK SVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137409.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-117MYB06_ANTMA; Myb-related protein 306
TrEMBLV7B1691e-120V7B169_PHAVU; Uncharacterized protein
STRINGPGSC0003DMT4000502871e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-105myb domain protein 94